BAT - Biodiversity Assessment Tools
AT is a R package that includes algorithms to assess alpha and beta diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows performing a number of analyses based on either species identities or
phylogenetic/functional trees depicting species relationships.
CARDOSO, P., RIGAL, F.
& CARVALHO, J.C. (2015).
Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and
beta taxon, phylogenetic and functional diversity.
Methods in Ecology and Evolution
. 6, 232-236
This package provides functions for fitting unimodal and multimodal gambin distributions to species-abundance distributions from ecological
MATTHEWS, T., BORREGAARD, M., GILLESPIE, C., UGLAND, K.,
, KRÜGER, R., MARQUES, R., SADLER, J., BORGES, P.A.V. & WHITTAKER,
Extension of the gambin model to multimodal species abundance distributions. (
MATTHEWS, T.J., BORREGAARD, M.K., UGLAND, K.I., BORGES, P.A.V.,
, CARDOSO, P., & WHITTAKER, R.J. (2014). The gambin model
provides a superior fit to species abundance distributions with a single free parameter: evidence, implementation and interpretation.
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